Broccoli cheddar baked egg bites with cottage cheese are the solution to busy weekday mornings when you need real nutrition without the fuss. In Betty’s kitchen, Sunday meal prep always included a double batch of these fluffy, protein-packed bites that her grandkids would grab on their way to school throughout the week.
I still remember the first time I experimented with adding cottage cheese to my egg bites. It was one of those happy accidents that changed everything. My daughter had left an open container in the fridge, and I thought, “Why not?” The result was so incredibly creamy and fluffy that my family insisted I never make them the old way again. Now, every Sunday afternoon, my kitchen fills with the savory aroma of melted cheddar and tender broccoli baking in those little muffin cups. There’s something deeply satisfying about lining up a week’s worth of breakfasts, knowing that even on the most hectic mornings, my family will start the day with something wholesome and homemade. Your kitchen’s about to smell incredible.

What Makes These Egg Bites So Special
These broccoli cheddar baked egg bites remind me of why I fell in love with make-ahead breakfasts in the first place. When my three kids were young and mornings felt like controlled chaos, having grab-and-go options saved my sanity more times than I can count.
- Packs 14 grams of protein per serving to keep you satisfied until lunch
- Uses simple pantry staples you likely already have on hand
- Comes together in just 40 minutes including baking time
- Stays fresh for 4 days refrigerated or freezes beautifully for longer storage
- Adapts easily to whatever vegetables you have in your crisper drawer
- Creates that perfect fluffy texture that even picky toddlers enjoy
I’ve watched these egg bites win over countless skeptical eaters at family brunches. There’s something about the combination of creamy cottage cheese and sharp cheddar that just works.
Ingredient Spotlight
Large eggs form the protein-rich base of these breakfast bites, providing structure and that classic egg bite texture we all love.
Cottage cheese is the secret ingredient that transforms ordinary egg bites into something extraordinary. I always choose full-fat cottage cheese for the creamiest results and maximum protein boost.
Cheddar cheese delivers sharp, tangy flavor that complements the mild cottage cheese perfectly. In my kitchen, I prefer a good quality sharp cheddar that melts beautifully.
Broccoli adds nutritious bulk and a pleasant bite to each muffin, plus it’s one of those vegetables that sneaks past even the pickiest eaters when it’s chopped small and baked into eggs.
Spinach brings extra nutrients and a pop of color without overwhelming the flavor. I’ve found that chopping it fine helps it distribute evenly throughout the bites.
Black pepper and salt season the egg mixture just enough to enhance all the other flavors without overpowering the natural taste of the vegetables and cheese.
How to Make Broccoli Cheddar Baked Egg Bites
Step 1. I’ve learned that preheating your oven to 300°F and generously spraying your muffin tray is crucial. This lower temperature prevents the eggs from puffing up too much and then deflating.
Step 2. Betty always starts by blending the eggs, cottage cheese, half the cheddar, salt, and pepper until completely smooth. This step is what creates that restaurant-quality creamy texture.
Step 3. Pour the egg mixture into each muffin cup about halfway full, leaving room for the vegetables and allowing space for the bites to rise slightly during baking.
Step 4. After years of making these, I learned to distribute the broccoli and spinach evenly between cups first, then top with the remaining cheddar and an extra pinch of seasoning if desired.
Step 5. Bake for 30 minutes or until the centers are set and no longer jiggly. Through trial and error, I discovered that checking them at 28 minutes prevents overbaking.
Step 6. The key I discovered is letting them cool for 5 minutes in the tray before removing. They’ll pop out much easier and maintain their shape beautifully.
Keeping These Egg Bites Fresh
I typically store leftover broccoli cheddar baked egg bites in an airtight container in the refrigerator for up to 4 days. They maintain their fluffy texture remarkably well, and my family actually prefers eating them throughout the week rather than all at once. Betty’s storage method works well because the cottage cheese keeps them moist even after several days.
These egg bites freeze beautifully for up to 3 months, which makes them perfect for serious meal prep sessions. I wrap each bite individually in plastic wrap, then place them all in a freezer-safe bag. For the best texture, I reheat frozen egg bites by microwaving them for 60 to 90 seconds straight from the freezer with no thawing needed. You can also reheat refrigerated bites in a 350°F oven for about 10 minutes if you prefer a slightly firmer exterior.

Perfect Partners for These Egg Bites
Fresh fruit salad – The bright, sweet flavors of seasonal berries or melon provide a refreshing contrast to the savory, cheese-filled egg bites.
Whole grain toast with butter – A simple piece of toast adds satisfying crunch and helps round out the meal with some healthy carbohydrates.
Sliced avocado with lime – The creamy, rich texture of avocado complements the fluffy eggs while adding healthy fats to keep you full longer.
Blueberry French toast casserole – For weekend mornings when you have a little extra time, this sweet breakfast pairs beautifully with savory egg bites for a complete brunch spread.
Crockpot breakfast casserole – Another make-ahead option that complements these egg bites perfectly for feeding a crowd at holiday gatherings.
Biscuits and gravy casserole – This hearty Southern classic brings comforting, rich flavors that turn these egg bites into part of a truly special weekend breakfast.
FAQs
Can I substitute the cottage cheese with something else? I recommend sticking with cottage cheese for the best texture and protein content, but Greek yogurt or ricotta can work in a pinch. Just know the texture will be slightly different and less fluffy.
Why are my egg bites rubbery? To prevent this issue, make sure you’re baking at the lower 300°F temperature and not overbaking. Rubbery texture usually comes from cooking eggs too quickly at high heat.
Can I make these dairy-free? Many home cooks find success with dairy-free cheese alternatives and silken tofu blended in place of cottage cheese, though the protein content will vary depending on your substitutions.
How do I prevent the egg bites from sticking? Betty’s solution is to spray your muffin tin very generously with nonstick spray and let the bites cool for at least 5 minutes before attempting to remove them from the pan.
Can I add meat to these egg bites? The best approach I’ve tested is adding cooked, crumbled bacon or diced ham along with the vegetables. Just make sure any meat is fully cooked before adding it to the egg mixture.
Do these reheat well for meal prep? I’ve found these broccoli cheddar baked egg bites reheat beautifully throughout the week, maintaining their fluffy texture whether you microwave them for 30 to 45 seconds or warm them in the oven.

Broccoli Cheddar Baked Egg Bites with Cottage Cheese
Ingredients
Equipment
Method
- Preheat oven to 300°F and spray a silicone or lined muffin tray generously with nonstick spray.
- In a blender, combine eggs, cottage cheese, half the cheddar cheese, salt, and pepper. Blend until completely smooth and creamy.
- Pour the egg mixture into muffin cups about halfway full. Add chopped broccoli and spinach evenly between cups.
- Top each egg bite with remaining cheddar cheese and a pinch of salt and pepper if desired.
- Bake for 30 minutes or until the centers are set and no longer jiggly.
- Let cool in the tray for 5 minutes before carefully removing. Serve warm or store for later.